USF1

From Wikipedia, the free encyclopedia

Upstream transcription factor 1

PDB rendering based on 1an4.

Available structures: 1an4

Identifiers

Symbol(s)

USF1; FCHL; FCHL1; HYPLIP1; MLTF; MLTFI; UEF

External IDs

OMIM: 191523 MGI: 99542 HomoloGene: 31426

Gene ontology
Molecular Function:	• transcription factor activity • specific RNA polymerase II transcription factor activity • transcription regulator activity
Cellular Component:	• nucleus
Biological Process:	• transcription from RNA polymerase II promoter • regulation of transcription • positive regulation of transcription, DNA-dependent

Orthologs

Human

Mouse

Refseq

NM_007122 (mRNA)
NP_009053 (protein)

NM_009480 (mRNA)
NP_033506 (protein)

Location

Chr 1: 159.28 - 159.28 Mb

Chr 1: 173.25 - 173.25 Mb

Pubmed search

[1]

[2]

Upstream transcription factor 1, also known as USF1, is a human gene.^[1]

This gene encodes a member of the basic helix-loop-helix leucine zipper family, and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. This gene has been linked to familial combined hyperlipidemia (FCHL). Two transcript variants encoding distinct isoforms have been identified for this gene.^[1]

[edit] References

^ ^a ^b Entrez Gene: USF1 upstream transcription factor 1.

[edit] Further reading

Corre S, Galibert MD (2006). "[USF as a key regulatory element of gene expression]". Med Sci (Paris) 22 (1): 62-7. PMID 16386222.
Lee JC, Lusis AJ, Pajukanta P (2007). "Familial combined hyperlipidemia: upstream transcription factor 1 and beyond.". Curr. Opin. Lipidol. 17 (2): 101-9. doi:10.1097/01.mol.0000217890.54875.13. PMID 16531745.
Roy AL, Meisterernst M, Pognonec P, Roeder RG (1992). "Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF.". Nature 354 (6350): 245-8. doi:10.1038/354245a0. PMID 1961251.
Gregor PD, Sawadogo M, Roeder RG (1991). "The adenovirus major late transcription factor USF is a member of the helix-loop-helix group of regulatory proteins and binds to DNA as a dimer.". Genes Dev. 4 (10): 1730-40. PMID 2249772.
Henrion AA, Martinez A, Mattei MG, et al. (1995). "Structure, sequence, and chromosomal location of the gene for USF2 transcription factors in mouse.". Genomics 25 (1): 36-43. PMID 7774954.
Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK (1994). "Structure and function of the b/HLH/Z domain of USF.". EMBO J. 13 (1): 180-9. PMID 8306960.
Shieh BH, Sparkes RS, Gaynor RB, Lusis AJ (1993). "Localization of the gene-encoding upstream stimulatory factor (USF) to human chromosome 1q22-q23.". Genomics 16 (1): 266-8. doi:10.1006/geno.1993.1174. PMID 8486371.
Viollet B, Lefrançois-Martinez AM, Henrion A, et al. (1996). "Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms.". J. Biol. Chem. 271 (3): 1405-15. PMID 8576131.
Ghosh AK, Datta PK, Jacob ST (1997). "The dual role of helix-loop--helix-zipper protein USF in ribosomal RNA gene transcription in vivo.". Oncogene 14 (5): 589-94. doi:10.1038/sj.onc.1200866. PMID 9053857.
Pognonec P, Boulukos KE, Aperlo C, et al. (1997). "Cross-family interaction between the bHLHZip USF and bZip Fra1 proteins results in down-regulation of AP1 activity.". Oncogene 14 (17): 2091-8. doi:10.1038/sj.onc.1201046. PMID 9160889.
Roy AL, Du H, Gregor PD, et al. (1998). "Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1.". EMBO J. 16 (23): 7091-104. doi:10.1093/emboj/16.23.7091. PMID 9384587.
Pajukanta P, Nuotio I, Terwilliger JD, et al. (1998). "Linkage of familial combined hyperlipidaemia to chromosome 1q21-q23.". Nat. Genet. 18 (4): 369-73. doi:10.1038/ng0498-369. PMID 9537421.
Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination.". Genome Res. 10 (11): 1788-95. PMID 11076863.
Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.". Genome Res. 11 (3): 422-35. doi:10.1101/gr.154701. PMID 11230166.
Bengtsson SH, Madeyski-Bengtson K, Nilsson J, Bjursell G (2002). "Transcriptional regulation of the human carboxyl ester lipase gene in THP-1 monocytes: an E-box required for activation binds upstream stimulatory factors 1 and 2.". Biochem. J. 365 (Pt 2): 481-8. doi:10.1042/BJ20020223. PMID 11945176.
Villavicencio EH, Yoon JW, Frank DJ, et al. (2002). "Cooperative E-box regulation of human GLI1 by TWIST and USF.". Genesis 32 (4): 247-58. PMID 11948912.
Coulson JM, Edgson JL, Marshall-Jones ZV, et al. (2003). "Upstream stimulatory factor activates the vasopressin promoter via multiple motifs, including a non-canonical E-box.". Biochem. J. 369 (Pt 3): 549-61. doi:10.1042/BJ20021176. PMID 12403649.
Salero E, Giménez C, Zafra F (2003). "Identification of a non-canonical E-box motif as a regulatory element in the proximal promoter region of the apolipoprotein E gene.". Biochem. J. 370 (Pt 3): 979-86. doi:10.1042/BJ20021142. PMID 12444925.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899-903. doi:10.1073/pnas.242603899. PMID 12477932.
Pickwell GV, Shih H, Quattrochi LC (2003). "Interaction of upstream stimulatory factor proteins with an E-box located within the human CYP1A2 5'-flanking gene contributes to basal transcriptional gene activation.". Biochem. Pharmacol. 65 (7): 1087-96. PMID 12663044.

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v • d • e

Transcription factors and intracellular receptors

(1) Basic domains

(1.1) Basic leucine zipper (bZIP)	Activating transcription factor (AATF, 1, 2, 3, 4, 5, 6, 7) • AP-1 (c-Fos, FOSB, FOSL1, FOSL2, c-Jun, JUNB, JUND) • BACH (1, 2) • BATF • BLZF1 • C/EBP (α, β, γ, δ, ε, ζ) • CREB (1, 3, L1) • CREM • DBP • DDIT3 • GABPA • HLF • MAF (B, F, G, K) • NFE (2, L1, L2) • NRL • NRF1 • XBP1

(1.2) Basic helix-loop-helix (bHLH)	ATOH1 • AhR • AHRR • ARNT • ASCL1 • BHLHB2 • BMAL (ARNTL, ARNTL2) • CLOCK • EPAS1 • HAND (1, 2) • HES (5, 6) • HEY (1, 2, L) • HES1 • HIF (1A, 3A) • ID (1, 2, 3, 4) • LYL1 • MXD4 • MYCL1 • MYCN • Myogenic regulatory factors (MyoD, Myogenin, MYF5, MYF6) • Neurogenins • NeuroD (1, 2) • NPAS (1, 2, 3) • OLIG (1, 2) • Scleraxis • TAL1 • Twist • USF1

(1.3) bHLH-ZIP	MAX • MITF • MNT • MLX • MXI1 • Myc • SREBP (1, 2)

(1.6) Basic helix-span-helix (bHSH)	AP-2

(2) Zinc finger
DNA-binding domains

(2.1) Nuclear receptor (Cys₄)	subfamily 1 (Thyroid hormone (α, β), CAR, FXR, LXR (α, β), PPAR (α, β/δ, γ), PXR, RAR (α, β, γ), ROR (α, β, γ), Rev-ErbA (α, β), VDR) • subfamily 2 (COUP-TF (I, II), Ear-2, HNF4 (α, γ), PNR, RXR (α, β, γ), Testicular receptor (2, 4), TLX) • subfamily 3 (Steroid hormone (Estrogen (α, β), Estrogen related (α, β, γ), Androgen, Glucocorticoid, Mineralocorticoid, Progesterone)) • subfamily 4 NUR (NGFIB, NOR1, NURR1) • subfamily 5 (LRH-1, SF1) • subfamily 6 (GCNF) • subfamily 0 (DAX1, SHP)

(2.2) Other Cys₄	GATA (1, 2, 3, 4, 5, 6) • MTA (1, 2, 3)

(2.3) Cys₂His₂	ATBF1 • BCL(6, 11A, 11B) • CTCF • E4F1 • EGR (2, 3) • ERV3 • General transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF: 1, 2, TFIIH: 1, 2, 4, 2I, 3A, 3C1, 3C2) • GFI1 • GLI-Krüppel family (1, 2, 3, YY1) • HIC (1, 2) • HIVEP (1, 2, 3) • IKZF (1, 2, 3) • ILF (2, 3) • KLF (2, 4, 5, 6, 9, 10, 11, 12, 13) • MTF1 • MYT1 • OSR1 • Sp1 • zinc finger ((3, 7, 9, 10, 19, 22, 24, 33B, 34, 35, 41, 43, 44, 51, 74, 143, 146, 148, 165, 202, 217, 219, 238, 239, 259, 267, 268, 281, 295, 318, 330, 346, 350, 365, 366, 384, 451, 452, 471, 593, 638, 649, 655) • Zbtb7 (7A) • ZBT (16, 17, 33)

(2.4) Cys₆	HIVEP1

(2.5) Alternating composition	AIRE • DIDO1 • GRLF1 • ING (1, 2, 4) • JARID (1A, 1B, 1C, 1D, 2) • JMJD1B

(3) Helix-turn-helix
domains

(3.1) Homeo domain	ARX • CDX (1, 2) • CRX • CUTL1 • DLX (3, 4, 5) • EMX2 • EN (1, 2) • FHL (1, 2, 3) • HESX1 • HHEX • HLX • Homeobox (A1, A3, A4, A5, A7, A9, A10, A11, A13, B1, B2, B3, B4, B5, B6, B7, B8, B9, B13, C4, C5, C6, C8, C9, C10, C11, C13, D1, D3, D4, D8, D9, D10, D11, D12, D13) • HOPX • MEIS (1, 2) • MEOX2 • MNX1 • MSX (1, 2) • NANOG • NKX (2-1, 2-5, 3-1) • PHF (3, 6, 10, 17) • POU domain (PIT-1, BRN-3: 1, 2, Octamer transcription factor: 1, 2, 3/4, 6, 7) • OTX (1, 2) • PDX1

(3.2) Paired box	PAX (1, 2, 3, 4, 5, 6, 7, 8, 9)

(3.3) Fork head / winged helix	E2F (1, 2, 3, 4, 5) • FOX proteins (C1, C2, E1, G1, H1, K2, L2, M1, N3, O1A, , O3A, O4, P1, P2, P3)

(3.4) Heat Shock Factors	HSF (1, 2, 4)

(3.5) Tryptophan clusters	ELF (4, 5) • EGF • ELK (1, 3, 4) • ERF • ERG • ETS (1, 2) • ETV (1, 4, 5, 6) • FLI1 • Interferon regulatory factors (1, 2, 3, 4, 5, 6, 7, 8) • MYB • MYBL2

(3.6) TEA domain	transcriptional enhancer factor 1, 2

(4) β-Scaffold factors with
minor groove contacts

(4.1) Rel homology region	NF-κB (NFKB1, NFKB2, REL, RELA, RELB) • NFAT (C1, C2, C3, C4, 5)

(4.2) STAT	STAT (1, 2, 3, 4, 5, 6)

(4.3) p53	p53

(4.4) MADS box	Mef2 (A, B, C, D) • SRF

(4.7) High mobility group	HNF (1A, 1B) • LEF1 • SOX (2, 3, 4, 5, 6, 8, 9, 10, 11, 13, 15, 18) • SRY • SSRP1

(4.10) Cold-shock domain	CSDA, YBX1

(4.11) Runt	CBF (CBFA2T2, CBFA2T3, RUNX1, RUNX2, RUNX3, RUNX1T1)

(0) Other
transcription factors

(0.2) HMGI(Y)	HMGA (1, 2) • HBP1

(0.3) Pocket domain	Rb • RBL1 • RBL2

(0.5) AP-2/EREBP-related factors	Apetala 2 • EREBP • B3

(0.6) Miscellaneous	ARID (1A, 1B, 2, 3A, 3B, 4A) • CAP • IFI (16, 35) • MLL (2, 3, T1) • MNDA • NFI (A, B, C, X) • NFY (A, B, C) • Rho/Sigma • R-SMAD

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USF1

From Wikipedia, the free encyclopedia

[edit] References

[edit] Further reading

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