Retinoic acid receptor beta

From Wikipedia, the free encyclopedia

Retinoic acid receptor, beta

PDB rendering based on 1dsz.

Available structures: 1dsz, 1hra, 1xap, 1xdk

Identifiers

Symbol(s)

RARB; HAP; NR1B2; RRB2

External IDs

OMIM: 180220 MGI: 97857 HomoloGene: 68100

Gene ontology
Molecular Function:	• transcription factor activity • steroid hormone receptor activity • retinoic acid receptor activity • receptor activity • zinc ion binding • sequence-specific DNA binding • metal ion binding
Cellular Component:	• cellular_component • nucleus
Biological Process:	• transcription • regulation of transcription, DNA-dependent • signal transduction

RNA expression pattern

More reference expression data

Orthologs

Human

Mouse

Refseq

NM_000965 (mRNA)
NP_000956 (protein)

NM_011243 (mRNA)
NP_035373 (protein)

Location

Chr 3: 25.19 - 25.61 Mb

Chr 14: 15.22 - 15.61 Mb

Pubmed search

[1]

[2]

Retinoic acid receptor beta (RAR-beta), also known as NR1B2 (nuclear receptor subfamily 1, group B, member 2) is a nuclear receptor encoded by the RARB gene.^[1]

This gene encodes retinoic acid receptor beta, a member of the thyroid-steroid hormone receptor superfamily of nuclear transcriptional regulators. This receptor localizes to the cytoplasm and to subnuclear compartments. It binds retinoic acid, the biologically active form of vitamin A which mediates cellular signalling in embryonic morphogenesis, cell growth and differentiation. It is thought that this protein limits growth of many cell types by regulating gene expression. The gene was first identified in a hepatocellular carcinoma where it flanks a hepatitis B virus integration site. The gene expresses at least two transcript variants; one additional transcript has been described, but its full length nature has not been determined.^[1]

[edit] See also

Retinoic acid receptor

[edit] References

^ ^a ^b Entrez Gene: RARB retinoic acid receptor, beta.

[edit] Further reading

Dejean A, de Thé H (1990). "Hepatitis B virus as an insertional mutagene in a human hepatocellular carcinoma.". Mol. Biol. Med. 7 (3): 213–22. PMID 2170809.
Sun SY (2004). "Retinoic acid receptor beta and colon cancer.". Cancer Biol. Ther. 3 (1): 87–8. PMID 14726690.
Saba N, Jain S, Khuri F (2004). "Chemoprevention in lung cancer.". Current problems in cancer 28 (5): 287–306. PMID 15375805.
Klein O, Grignon Y, Civit T, et al. (2006). "[Methylation status of RARbeta gene promoter in low and high grade cerebral glioma. Comparison with normal tissue. Immuno-histochemical study of nuclear RARbeta expression in low and high grade cerebral glioma cells. Comparison with normal cells. 48 tumors]". Neuro-Chirurgie 51 (3-4 Pt 1): 147–54. PMID 16389900.
Katahira M, Knegtel RM, Boelens R, et al. (1992). "Homo- and heteronuclear NMR studies of the human retinoic acid receptor beta DNA-binding domain: sequential assignments and identification of secondary structure elements.". Biochemistry 31 (28): 6474–80. PMID 1321662.
Berrodin TJ, Marks MS, Ozato K, et al. (1992). "Heterodimerization among thyroid hormone receptor, retinoic acid receptor, retinoid X receptor, chicken ovalbumin upstream promoter transcription factor, and an endogenous liver protein.". Mol. Endocrinol. 6 (9): 1468–78. PMID 1331778.
van der Leede BJ, Folkers GE, Kruyt FA, van der Saag PT (1992). "Genomic organization of the human retinoic acid receptor beta 2.". Biochem. Biophys. Res. Commun. 188 (2): 695–702. PMID 1332705.
Prentice A, Matthews CJ, Thomas EJ, Redfern CP (1992). "The expression of retinoic acid receptors in cultured human endometrial stromal cells and effects of retinoic acid.". Hum. Reprod. 7 (5): 692–700. PMID 1379266.
Shen S, Kruyt FA, den Hertog J, et al. (1992). "Mouse and human retinoic acid receptor beta 2 promoters: sequence comparison and localization of retinoic acid responsiveness.". DNA Seq. 2 (2): 111–9. PMID 1663808.
de Thé H, Vivanco-Ruiz MM, Tiollais P, et al. (1990). "Identification of a retinoic acid responsive element in the retinoic acid receptor beta gene.". Nature 343 (6254): 177–80. doi:10.1038/343177a0. PMID 2153268.
Hoffmann B, Lehmann JM, Zhang XK, et al. (1991). "A retinoic acid receptor-specific element controls the retinoic acid receptor-beta promoter.". Mol. Endocrinol. 4 (11): 1727–36. PMID 2177841.
de Thé H, Marchio A, Tiollais P, Dejean A (1988). "A novel steroid thyroid hormone receptor-related gene inappropriately expressed in human hepatocellular carcinoma.". Nature 330 (6149): 667–70. doi:10.1038/330667a0. PMID 2825037.
Brand N, Petkovich M, Krust A, et al. (1988). "Identification of a second human retinoic acid receptor.". Nature 332 (6167): 850–3. doi:10.1038/332850a0. PMID 2833708.
Benbrook D, Lernhardt E, Pfahl M (1988). "A new retinoic acid receptor identified from a hepatocellular carcinoma.". Nature 333 (6174): 669–72. doi:10.1038/333669a0. PMID 2836738.
Mattei MG, de Thé H, Mattei JF, et al. (1988). "Assignment of the human hap retinoic acid receptor RAR beta gene to the p24 band of chromosome 3.". Hum. Genet. 80 (2): 189–90. PMID 2844650.
Dejean A, Bougueleret L, Grzeschik KH, Tiollais P (1986). "Hepatitis B virus DNA integration in a sequence homologous to v-erb-A and steroid receptor genes in a hepatocellular carcinoma.". Nature 322 (6074): 70–2. doi:10.1038/322070a0. PMID 3014347.
Si SP, Tsou HC, Lee X, Peacocke M (1995). "Effect of cellular senescence and retinoic acid on the expression of cellular retinoic acid binding proteins in skin fibroblasts.". Exp. Cell Res. 219 (1): 243–8. doi:10.1006/excr.1995.1224. PMID 7628539.
Houle B, Pelletier M, Wu J, et al. (1994). "Fetal isoform of human retinoic acid receptor beta expressed in small cell lung cancer lines.". Cancer Res. 54 (2): 365–9. PMID 8275470.
Knegtel RM, Katahira M, Schilthuis JG, et al. (1993). "The solution structure of the human retinoic acid receptor-beta DNA-binding domain.". J. Biomol. NMR 3 (1): 1–17. PMID 8383553.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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v • d • e

Transcription factors and intracellular receptors

(1) Basic domains

(1.1) Basic leucine zipper (bZIP)	Activating transcription factor (AATF, 1, 2, 3, 4, 5, 6, 7) • AP-1 (c-Fos, FOSB, FOSL1, FOSL2, c-Jun, JUNB, JUND) • BACH (1, 2) • BATF • BLZF1 • C/EBP (α, β, γ, δ, ε, ζ) • CREB (1, 3, L1) • CREM • DBP • DDIT3 • GABPA • HLF • MAF (B, F, G, K) • NFE (2, L1, L2) • NRL • NRF1 • XBP1

(1.2) Basic helix-loop-helix (bHLH)	ATOH1 • AhR • AHRR • ARNT • ASCL1 • BHLHB2 • BMAL (ARNTL, ARNTL2) • CLOCK • EPAS1 • HAND (1, 2) • HES (5, 6) • HEY (1, 2, L) • HES1 • HIF (1A, 3A) • ID (1, 2, 3, 4) • LYL1 • MXD4 • MYCL1 • MYCN • Myogenic regulatory factors (MyoD, Myogenin, MYF5, MYF6) • Neurogenins • NeuroD (1, 2) • NPAS (1, 2, 3) • OLIG (1, 2) • Scleraxis • TAL1 • Twist • USF1

(1.3) bHLH-ZIP	MAX • MITF • MNT • MLX • MXI1 • Myc • SREBP (1, 2)

(1.6) Basic helix-span-helix (bHSH)	AP-2

(2) Zinc finger
DNA-binding domains

(2.1) Nuclear receptor (Cys₄)	subfamily 1 (Thyroid hormone (α, β), CAR, FXR, LXR (α, β), PPAR (α, β/δ, γ), PXR, RAR (α, β, γ), ROR (α, β, γ), Rev-ErbA (α, β), VDR) • subfamily 2 (COUP-TF (I, II), Ear-2, HNF4 (α, γ), PNR, RXR (α, β, γ), Testicular receptor (2, 4), TLX) • subfamily 3 (Steroid hormone (Estrogen (α, β), Estrogen related (α, β, γ), Androgen, Glucocorticoid, Mineralocorticoid, Progesterone)) • subfamily 4 NUR (NGFIB, NOR1, NURR1) • subfamily 5 (LRH-1, SF1) • subfamily 6 (GCNF) • subfamily 0 (DAX1, SHP)

(2.2) Other Cys₄	GATA (1, 2, 3, 4, 5, 6) • MTA (1, 2, 3)

(2.3) Cys₂His₂	ATBF1 • BCL(6, 11A, 11B) • CTCF • E4F1 • EGR (2, 3) • ERV3 • General transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF: 1, 2, TFIIH: 1, 2, 4, 2I, 3A, 3C1, 3C2) • GFI1 • GLI-Krüppel family (1, 2, 3, YY1) • HIC (1, 2) • HIVEP (1, 2, 3) • IKZF (1, 2, 3) • ILF (2, 3) • KLF (2, 4, 5, 6, 9, 10, 11, 12, 13) • MTF1 • MYT1 • OSR1 • Sp1 • zinc finger ((3, 7, 9, 10, 19, 22, 24, 33B, 34, 35, 41, 43, 44, 51, 74, 143, 146, 148, 165, 202, 217, 219, 238, 239, 259, 267, 268, 281, 295, 318, 330, 346, 350, 365, 366, 384, 451, 452, 471, 593, 638, 649, 655) • Zbtb7 (7A) • ZBT (16, 17, 33)

(2.4) Cys₆	HIVEP1

(2.5) Alternating composition	AIRE • DIDO1 • GRLF1 • ING (1, 2, 4) • JARID (1A, 1B, 1C, 1D, 2) • JMJD1B

(3) Helix-turn-helix
domains

(3.1) Homeo domain	ARX • CDX (1, 2) • CRX • CUTL1 • DLX (3, 4, 5) • EMX2 • EN (1, 2) • FHL (1, 2, 3) • HESX1 • HHEX • HLX • Homeobox (A1, A3, A4, A5, A7, A9, A10, A11, A13, B1, B2, B3, B4, B5, B6, B7, B8, B9, B13, C4, C5, C6, C8, C9, C10, C11, C13, D1, D3, D4, D8, D9, D10, D11, D12, D13) • HOPX • MEIS (1, 2) • MEOX2 • MNX1 • MSX (1, 2) • NANOG • NKX (2-1, 2-5, 3-1) • PHF (3, 6, 10, 17) • POU domain (PIT-1, BRN-3: 1, 2, Octamer transcription factor: 1, 2, 3/4, 6, 7) • OTX (1, 2) • PDX1

(3.2) Paired box	PAX (1, 2, 3, 4, 5, 6, 7, 8, 9)

(3.3) Fork head / winged helix	E2F (1, 2, 3, 4, 5) • FOX proteins (C1, C2, E1, G1, H1, K2, L2, M1, N3, O1A, , O3A, O4, P1, P2, P3)

(3.4) Heat Shock Factors	HSF (1, 2, 4)

(3.5) Tryptophan clusters	ELF (4, 5) • EGF • ELK (1, 3, 4) • ERF • ERG • ETS (1, 2) • ETV (1, 4, 5, 6) • FLI1 • Interferon regulatory factors (1, 2, 3, 4, 5, 6, 7, 8) • MYB • MYBL2

(3.6) TEA domain	transcriptional enhancer factor 1, 2

(4) β-Scaffold factors with
minor groove contacts

(4.1) Rel homology region	NF-κB (NFKB1, NFKB2, REL, RELA, RELB) • NFAT (C1, C2, C3, C4, 5)

(4.2) STAT	STAT (1, 2, 3, 4, 5, 6)

(4.3) p53	p53

(4.4) MADS box	Mef2 (A, B, C, D) • SRF

(4.7) High mobility group	HNF (1A, 1B) • LEF1 • SOX (2, 3, 4, 5, 6, 8, 9, 10, 11, 13, 15, 18) • SRY • SSRP1

(4.10) Cold-shock domain	CSDA, YBX1

(4.11) Runt	CBF (CBFA2T2, CBFA2T3, RUNX1, RUNX2, RUNX3, RUNX1T1)

(0) Other
transcription factors

(0.2) HMGI(Y)	HMGA (1, 2) • HBP1

(0.3) Pocket domain	Rb • RBL1 • RBL2

(0.5) AP-2/EREBP-related factors	Apetala 2 • EREBP • B3

(0.6) Miscellaneous	ARID (1A, 1B, 2, 3A, 3B, 4A) • CAP • IFI (16, 35) • MLL (2, 3, T1) • MNDA • NFI (A, B, C, X) • NFY (A, B, C) • Rho/Sigma • R-SMAD

Categories: Genes on chromosome 3 | Human proteins | Chromosome 3 gene stubs | Intracellular receptors | Transcription factors

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Retinoic acid receptor beta

From Wikipedia, the free encyclopedia

[edit] See also

[edit] References

[edit] Further reading

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